Omer Gokcumen,: search on Z-Library

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1

The Impact of Ancient Genome Studies in Archaeology

Gokcumen, Omer, Frachetti, Michael

Journal:

Annual Review of Anthropology

Year:

2020

File:

PDF, 336 KB

2020

2

Archaic hominin introgression into modern human genomes

Journal:

American Journal of Physical Anthropology

Year:

2019

Language:

english

File:

PDF, 2.32 MB

english, 2019

3

The Year In Genetic Anthropology: New Lands, New Technologies, New Questions

Journal:

American Anthropologist

Year:

2018

Language:

english

File:

PDF, 114 KB

english, 2018

4

Genome-wide Selection Scan in an Arabian Peninsula Population Identifies a TNKS haplotype Linked to Metabolic Traits and Hypertension

Eaaswarkhanth, Muthukrishnan, dos Santos, Andre Luiz Campelo, Gokcumen, Omer, Al-Mulla, Fahd, Thanaraj, Thangavel Alphonse, Majumder, Partha T E

Journal:

Genome Biology and Evolution

Year:

2020

Language:

english

File:

PDF, 1.70 MB

english, 2020

5

Genetic variation in the enigmatic Altaian Kazakhs of South-Central Russia: Insights into Turkic population history

Omer Gokcumen, Matthew C. Dulik, Athma A. Pai, Sergey I. Zhadanov, Samara Rubinstein, Ludmila P. Osipova, Oleg V. Andreenkov, Ludmila E. Tabikhanova, Marina A. Gubina, Damian Labuda, Theodore G. Schur

Journal:

American Journal of Physical Anthropology

Year:

2008

Language:

english

File:

PDF, 473 KB

english, 2008

6

Origins and functional impact of copy number variation in the human genome

Conrad, Donald F., Pinto, Dalila, Redon, Richard, Feuk, Lars, Gokcumen, Omer, Zhang, Yujun, Aerts, Jan, Andrews, T. Daniel, Barnes, Chris, Campbell, Peter

Journal:

Year:

2009

Language:

english

File:

PDF, 615 KB

english, 2009

7

Y-chromosome and autosomal STR diversity in four proximate settlements in Central Anatolia

Yesim Dogan Alakoc, Omer Gokcumen, Aysim Tug, Timur Gultekin, Erksin Gulec, Theodore G. Schurr

Journal:

Forensic Science International: Genetics

Year:

2010

Language:

english

File:

PDF, 90 KB

english, 2010

8

Variation and functional impact of Neanderthal ancestry in Western Asia

Taskent, Recep Ozgur, Alioglu, Duha, Fer, Evrim, Donertas, Handan Melike, Somel, Mehmet, Gokcumen, Omer

Journal:

Genome Biology and Evolution

Year:

2017

Language:

english

File:

PDF, 957 KB

english, 2017

9

Fine-scale characterization of genomic structural variation in the human genome reveals adaptive and biomedically relevant hotspots

Lin, Yen-Lung, Gokcumen, Omer, Chang, Belinda

Journal:

Genome Biology and Evolution

Year:

2019

Language:

english

File:

PDF, 1002 KB

english, 2019

10

Biological Ancestries, Kinship Connections, and Projected Identities in Four Central Anatolian Settlements: Insights from Culturally Contextualized Genetic Anthropology

Ömer Gokcumen, Timur Gultekin, Yesim Dogan Alakoc, Aysim Tug, Erksin Gulec, Theodore G. Schurr

Journal:

American Anthropologist

Year:

2011

Language:

english

File:

PDF, 503 KB

english, 2011

11

Discovery of common Asian copy number variants using integrated high-resolution array CGH and massively parallel DNA sequencing

Mills, Ryan E, Kim, Sheehyun, Lee, Seungbok, Suh, Dongwhan, Hong, Dongwan, Kang, Hyunseok Peter, Park, Hansoo, Kim, Jong-Il, Ju, Young Seok, Gokcumen, Omer

Journal:

Nature Genetics

Year:

2010

Language:

english

File:

PDF, 1.15 MB

english, 2010

12

Mitochondrial DNA and Y Chromosome Variation Provides Evidence for a Recent Common Ancestry between Native Americans and Indigenous Altaians

Matthew C. Dulik, Sergey I. Zhadanov, Ludmila P. Osipova, Ayken Askapuli, Lydia Gau, Omer Gokcumen, Samara Rubinstein, Theodore G. Schurr

Journal:

The American Journal of Human Genetics

Year:

2012

Language:

english

File:

PDF, 463 KB

english, 2012

13

Mitochondrial DNA and Y Chromosome Variation Provides Evidence for a Recent Common Ancestry between Native Americans and Indigenous Altaians

Matthew C. Dulik, Sergey I. Zhadanov, Ludmila P. Osipova, Ayken Askapuli, Lydia Gau, Omer Gokcumen, Samara Rubinstein, Theodore G. Schurr

Journal:

The American Journal of Human Genetics

Year:

2012

Language:

english

File:

PDF, 24 KB

english, 2012

14

Exploring the role of copy number variants in human adaptation

Rebecca C. Iskow, Omer Gokcumen, Charles Lee

Journal:

Trends in Genetics

Year:

2012

Language:

english

File:

PDF, 694 KB

english, 2012

15

Copy number variants (CNVs) in primate species using array-based comparative genomic hybridization

Ömer Gökçümen, Charles Lee

Journal:

Year:

2009

Language:

english

File:

PDF, 690 KB

english, 2009

16

Impact of constitutional copy number variants on biological pathway evolution

Maria Poptsova, Samprit Banerjee, Omer Gokcumen, Mark A Rubin…

Journal:

BMC Evolutionary Biology

Year:

2013

Language:

english

File:

PDF, 495 KB

english, 2013

17

Analysis of somatic retrotransposition in human cancers

Eunjung Lee, Rebecca Iskow, Lixing Yang, Omer Gokcumen, Psalm Haseley…

Journal:

BMC Proceedings

Year:

2012

Language:

english

File:

PDF, 63 KB

english, 2012

18

Refinement of primatecopy number variationhotspots identifies candidate genomic regions evolving under positive selection

Omer Gokcumen, Paul L Babb, Rebecca C Iskow, Qihui Zhu, Xinghua Shi…

Journal:

Year:

2011

Language:

english

File:

PDF, 3.93 MB

english, 2011

19

Russian Old Believers: Genetic Consequences of Their Persecution and Exile, as Shown by Mitochondrial DNA Evidence

SAMARA RUBINSTEIN, MATTHEW C. DULIK, OMER GOKCUMEN, SERGEY ZHADANOV, LUDMILA OSIPOVA, MAGGIE COCCA, NISHI MEHTA, MARINA GUBINA, OLGA POSUKH and THEODORE G. SCHURR

Journal:

Year:

2008

Language:

english

File:

PDF, 2.65 MB

english, 2008

20

Russian Old Believers: Genetic Consequences of Their Persecution and Exile, as Shown by Mitochondrial DNA Evidence

Rubinstein, Samara, Dulik, Matthew C., Gokcumen, Omer, Zhadanov, Sergey, Osipova, Ludmila, Cocca, Maggie, Mehta, Nishi, Gubina, Marina, Posukh, Olga, Schurr, Theodore G.

Journal:

Year:

2008

Language:

english

File:

PDF, 643 KB

english, 2008

21

Whole genome sequencing of Turkish genomes reveals functional private alleles and impact of genetic interactions with Europe, Asia and Africa

Alkan, Can, Kavak, Pinar, Somel, Mehmet, Gokcumen, Omer, Ugurlu, Serkan, Saygi, Ceren, Dal, Elif, Bugra, Kuyas, Güngör, Tunga, Sahinalp, S, Özören, Nesrin, Bekpen, Cemalettin

Journal:

Year:

2014

Language:

english

File:

PDF, 2.15 MB

english, 2014

22

Balancing Selection on a Regulatory Region Exhibiting Ancient Variation That Predates Human–Neandertal Divergence

Gokcumen, Omer, Zhu, Qihui, Mulder, Lubbertus C. F., Iskow, Rebecca C., Austermann, Christian, Scharer, Christopher D., Raj, Towfique, Boss, Jeremy M., Sunyaev, Shamil, Price, Alkes, Stranger, Barbara

Journal:

Year:

2013

Language:

english

File:

PDF, 1.53 MB

english, 2013

23

Next-generation sequencing-based detection of germline L1-mediated transductions

Tica, Jelena, Lee, Eunjung, Untergasser, Andreas, Meiers, Sascha, Garfield, David A., Gokcumen, Omer, Furlong, Eileen E.M., Park, Peter J., Stütz, Adrian M., Korbel, Jan O.

Journal:

Year:

2016

Language:

english

File:

PDF, 3.39 MB

english, 2016

24

Atopic Dermatitis Susceptibility Variants In Filaggrin Hitchhike Hornerin Selective Sweep

Eaaswarkhanth, Muthukrishnan, Xu, Duo, Flanagan, Colin, Rzhetskaya, Margarita, Hayes, M. Geoffrey, Blekhman, Ran, Jablonski, Nina, Gokcumen, Omer

Journal:

Genome Biology and Evolution

Year:

2016

Language:

english

File:

PDF, 2.38 MB

english, 2016

25

Regulation of lipids is central to replicative senescence

Lizardo, Darleny Y., Lin, Yen-Lung, Gokcumen, Omer, Atilla-Gokcumen, G. Ekin

Journal:

Molecular BioSystems

Year:

2017

Language:

english

File:

PDF, 3.34 MB

english, 2017

26

The psoriasis-associated deletion of late cornified envelope genesLCE3BandLCE3Chas been maintained under balancing selection since Human Denisovan divergence

Petar Pajic,Yen-Lung Lin,Duo Xu,Omer Gokcumen

Journal:

BMC Evolutionary Biology

Year:

2016

Language:

english

File:

PDF, 1.29 MB

english, 2016

27

Archaic hominin introgression in Africa contributes to functional salivary MUC7 genetic variation

Xu, Duo, Pavlidis, Pavlos, Taskent, Recep Ozgur, Alachiotis, Nikolaos, Flanagan, Colin, DeGiorgio, Michael, Blekhman, Ran, Ruhl, Stefan, Gokcumen, Omer

Journal:

Molecular Biology and Evolution

Year:

2017

Language:

english

File:

PDF, 1.34 MB

english, 2017

28

Recent evolution of the salivary mucin MUC7

Xu, Duo, Pavlidis, Pavlos, Thamadilok, Supaporn, Redwood, Emilie, Fox, Sara, Blekhman, Ran, Ruhl, Stefan, Gokcumen, Omer

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 1.53 MB

english, 2016

29

VCFtoTree: a user-friendly tool to construct locus-specific alignments and phylogenies from thousands of anthropologically relevant genome sequences

Xu, Duo, Jaber, Yousef, Pavlidis, Pavlos, Gokcumen, Omer

Journal:

BMC Bioinformatics

Year:

2017

Language:

english

File:

PDF, 1.48 MB

english, 2017

30

The Multiple Histories of Western Asia: Perspectives from Ancient and Modern Genomes

Recep Ozgur Taskent,, Omer Gokcumen,

Journal:

Year:

2017

Language:

english

File:

PDF, 170 KB

english, 2017

31

An evolutionary transcriptomics approach links CD36 to membrane remodeling in replicative senescence

Saitou, Marie, Lizardo, Darleny Y, Taskent, Recep Ozgur, Millner, Alec, Gokcumen, Omer, Atilla-Gokcumen, Gunes Ekin

Journal:

Molecular Omics

Year:

2018

Language:

english

File:

PDF, 1.42 MB

english, 2018

32

Complex Haplotypes of GSTM1 Gene Deletions Harbor Signatures of a Selective Sweep in East Asian Populations

Saitou, Marie, Satta, Yoko, Gokcumen, Omer

Journal:

G3 Genes|Genome|Genetics

Year:

2018

Language:

english

File:

PDF, 1.59 MB

english, 2018

33

Shades of complexity: New perspectives on the evolution and genetic architecture of human skin

Quillen, Ellen E., Norton, Heather L., Parra, Esteban J., Lona-Durazo, Frida, Ang, Khai C., Illiescu, Florin Mircea, Pearson, Laurel N., Shriver, Mark D., Lasisi, Tina, Gokcumen, Omer, Starr, Izzy, Li

Journal:

American Journal of Physical Anthropology

Year:

2018

Language:

english

File:

PDF, 3.36 MB

english, 2018

34

Filamentation Regulatory Pathways Control Adhesion-Dependent Surface Responses in Yeast

Chow, Jacky, Starr, Izzy, Jamalzadeh, Sheida, Muniz, Omar, Kumar, Anuj, Gokcumen, Omer, Ferkey, Denise M., Cullen, Paul J.

Journal:

Year:

2019

Language:

english

File:

PDF, 7.07 MB

english, 2019

35

Resolving the Insertion Sites of Polymorphic Duplications Reveals a HERC2 Haplotype under Selection

Saitou, Marie, Gokcumen, Omer, Alba, Mar

Journal:

Genome Biology and Evolution

Year:

2019

File:

PDF, 610 KB

2019

36

An Evolutionary Perspective on the Impact of Genomic Copy Number Variation on Human Health

Saitou, Marie, Gokcumen, Omer

Journal:

Journal of Molecular Evolution

Year:

2019

Language:

english

File:

PDF, 1.42 MB

english, 2019

37

Human and Non-Human Primate Lineage-Specific Footprints in the Salivary Proteome

Thamadilok, Supaporn, Choi, Kyoung-Soo, Ruhl, Lorenz, Schulte, Fabian, Kazim, A Latif, Hardt, Markus, Gokcumen, Omer, Ruhl, Stefan, Nowick, Katja

Journal:

Molecular Biology and Evolution

Year:

2019

Language:

english

File:

PDF, 1.03 MB

english, 2019

38

Loss-of-function tolerance of enhancers in the human genome

Xu, Duo, Gokcumen, Omer, Khurana, Ekta, Ahituv, Nadav

Journal:

Year:

2020

File:

PDF, 2.66 MB

2020

39

Functional Specialization of Human Salivary Glands and Origins of Proteins Intrinsic to Human Saliva

Saitou, Marie, Gaylord, Eliza A., Xu, Erica, May, Alison J., Neznanova, Lubov, Nathan, Sara, Grawe, Anissa, Chang, Jolie, Ryan, William, Ruhl, Stefan, Knox, Sarah M., Gokcumen, Omer

Journal:

Year:

2020

File:

PDF, 496 KB

2020

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